PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0083s0043.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 537aa    MW: 56946.7 Da    PI: 7.0962
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0083s0043.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14e-10102127227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           +++ C +++rtG C +G +C+F+H+p
  Sphfalx0083s0043.2.p 102 GEPDCVYYMRTGMCGFGQSCRFNHPP 127
                           5799********************97 PP

2zf-CCCH36.11.1e-11147172227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C+++++tGtCk+G++Ck++H++
  Sphfalx0083s0043.2.p 147 GQPECQYYLKTGTCKFGATCKYHHPR 172
                           789*********************96 PP

3zf-CCCH34.43.8e-11193218227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C +++rtG Cky  +CkF+H++
  Sphfalx0083s0043.2.p 193 GEKECAYYMRTGSCKYNVTCKFHHPQ 218
                           7899********************97 PP

4zf-CCCH35.81.4e-11356382127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+++++tG Ck+G +C+++H++
  Sphfalx0083s0043.2.p 356 PGQPECQYYMKTGDCKFGITCRYHHPK 382
                           5789*********************96 PP

5zf-CCCH25.62.1e-08405427426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           + C f+a +G+Ck+G++CkF H+
  Sphfalx0083s0043.2.p 405 PQCAFYAHYGICKFGPTCKFDHP 427
                           67********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-5100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404100128IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-6103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5105128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4106126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.732145173IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6145172IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9146172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6148174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4151173IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4191218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404191219IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9193218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6194219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4197217IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5355382IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774355383IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8357382IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5358384IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015401428IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845401429IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-6405427IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MEYYAPAKGA PSSFVGLEGG SGSDSTGGLA VAVLGSIAYE DWGIKHGAPS PGNTTADTGA  60
DGLSEAVWHM TIQQQQQPLP PPQDGGMDHP AGQQGQFPER LGEPDCVYYM RTGMCGFGQS  120
CRFNHPPNRK LAAAVARGKG DYPERFGQPE CQYYLKTGTC KFGATCKYHH PRDQAGSTGR  180
VQLNVLGLPL RPGEKECAYY MRTGSCKYNV TCKFHHPQPT AYVSPVYTTS GVSTSPAAQP  240
YPQGLPSWPM ARAPYLQPRL QAPSSYSPVI IPSHQGLMSM PGWNPYQGGV GPMGLSEGQQ  300
QSLGTSYVYG TLQHSDSSSV HGTYTPYLQG SSAMGIPAIQ SHNINSQKDV IFPERPGQPE  360
CQYYMKTGDC KFGITCRYHH PKDRATPSPT CILSPIGLPL RPGAPQCAFY AHYGICKFGP  420
TCKFDHPTVG LTYSPSASSL TDMPVSPFPT GSSPTALGPS SSIQGLHAGP SGTSSTIEPA  480
APSEELPGLQ QYRDGTDMPT VGASAGATTT QDMSTQVAIP RTGSGEDSKV ETHEIS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001768387.11e-160predicted protein, partial
SwissprotQ9SWF91e-141ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA9SQ001e-160A9SQ00_PHYPA; Predicted protein (Fragment)
STRINGPP1S102_155V6.11e-160(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-123zinc finger protein 1